Transcript: lnc-RAD52-2:4

Basic information

LNCipedia transcript ID: lnc-RAD52-2:4 
LNCipedia gene ID: lnc-RAD52-2
Ensembl Gene ID: ENSG00000250132
Ensembl Transcript ID: ENST00000543290
Location (hg38): chr12:989852-990608
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 512 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT025380; ENST00000543290.1
Alternative gene names: ENSG00000250132.2; RP11-359B12.2; ENSG00000250132.6; AC004803.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.8924 non-coding 
CPAT coding probability 11.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAD52-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NINJ2-2:5
4.0 lnc-RAD52-2:4
4.1 lnc-RAD52-2:4
5.0 lnc-RAD52-2:4
5.1 lnc-CHD4-114:10
5.2 lnc-RAD52-2:4