Transcript: lnc-RAD52-2:5

Basic information

LNCipedia transcript ID: lnc-RAD52-2:5 
LNCipedia gene ID: lnc-RAD52-2
Location (hg38): chr12:975298-990041
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2042 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000503602; ENST00000503602.1; RP11-359B12.1-001; OTTHUMT00000397929.1; NONHSAT140045
Alternative gene names: ENSG00000250132; ENSG00000250132.1; RP11-359B12.1; OTTHUMG00000168069.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7656 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAD52-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NINJ2-2:1
3.1 lnc-NINJ2-2:1
4.0 lnc-RAD52-2:5
4.1 lnc-RAD52-2:5
5.0 lnc-RAD52-2:5
5.1 lnc-CHD4-114:12
5.2 lnc-RAD52-2:5