Transcript: lnc-RAI1-2:2

Basic information

LNCipedia transcript ID: lnc-RAI1-2:2 
LNCipedia gene ID: lnc-RAI1-2
Ensembl Gene ID: ENSG00000197815
Ensembl Transcript ID: ENST00000354746
Location (hg38): chr17:17858227-17860041
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1815 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000354746.4
Alternative gene names: ENSG00000197815.4; RP1-253P7.4; AC122129.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.9623 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAI1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RAI1-2:2
4.1 lnc-RAI1-2:2
5.0 lnc-RAI1-2:2
5.1 lnc-GLP2R-110:1
5.2 lnc-RAI1-2:2