Transcript: lnc-RALGAPA1-1:1

Basic information

LNCipedia transcript ID: lnc-RALGAPA1-1:1 
LNCipedia gene ID: lnc-RALGAPA1-1
Ensembl Gene ID: ENSG00000258938
Ensembl Transcript ID: ENST00000555918
Location (hg38): chr14:35819224-35826765
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2867 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501776; ENST00000555918.1; RP11-317N8.5-001; OTTHUMT00000409824.1; NONHSAT036397
Alternative gene names: ENSG00000247439; ENSG00000258938.1; RP11-317N8.5; OTTHUMG00000170615.1; AL162311.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.5907 coding 
CPAT coding probability 18.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RALGAPA1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RALGAPA1-1:1
3.1 lnc-RALGAPA1-1:1
4.0 lnc-RALGAPA1-1:1
4.1 lnc-RALGAPA1-1:1
5.0 lnc-RALGAPA1-1:1
5.1 lnc-EFS-161:1
5.2 lnc-RALGAPA1-1:1