Transcript: lnc-RALGAPA1-1:3

Basic information

LNCipedia transcript ID: lnc-RALGAPA1-1:3 
LNCipedia gene ID: lnc-RALGAPA1-1
Location (hg38): chr14:35819224-35826736
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2838 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000258938.1|ENST00000555918.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 67.5907 coding 
CPAT coding probability 10.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RALGAPA1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RALGAPA1-1:3
5.0 lnc-RALGAPA1-1:3
5.1 lnc-EFS-161:3
5.2 lnc-RALGAPA1-1:3