Transcript: lnc-RALGPS1-2:1

Basic information

LNCipedia transcript ID: lnc-RALGPS1-2:1 
LNCipedia gene ID: lnc-RALGPS1-2
Location (hg38): chr9:127224611-127241315
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2627 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000452976.1; RP13-225O21.3-001; OTTHUMT00000054147.1; NONHSAT134796
Alternative gene names: ENSG00000244210.1; RP13-225O21.3; OTTHUMG00000020698.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3287 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RALGPS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RALGPS1-2:1
4.0 lnc-RALGPS1-2:1
4.1 lnc-RALGPS1-2:1
5.0 lnc-RALGPS1-2:1
5.1 lnc-PTPA-118:1
5.2 lnc-RALGPS1-2:1