Transcript: lnc-RAN-2:1

Basic information

LNCipedia transcript ID: lnc-RAN-2:1 
LNCipedia gene ID: lnc-RAN-2
Ensembl Gene ID: ENSG00000256204
Ensembl Transcript ID: ENST00000537998
Location (hg38): chr12:130977562-130978768
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 409 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000537998; ENST00000537998.1; RP11-243M5.1-001; OTTHUMT00000399374.1; NONHSAT031994
Alternative gene names: ENSG00000256204; RP11-243M5.1; ENSG00000256204.1; OTTHUMG00000168343.1; AC073862.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.4488 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAN-2:1
3.1 lnc-RAN-2:1
4.0 lnc-RAN-2:1
4.1 lnc-RAN-2:1
5.0 lnc-RAN-2:1
5.1 lnc-RAN-2:1
5.2 lnc-RAN-2:1