Transcript: lnc-RAN-4:5

Basic information

LNCipedia transcript ID: lnc-RAN-4:5 
LNCipedia gene ID: lnc-RAN-4
Ensembl Gene ID: ENSG00000256343
Ensembl Transcript ID: ENST00000585405
Location (hg38): chr12:130667469-130669233
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 616 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT031978; ENST00000585405.1
Alternative gene names: ENSG00000256343.3; RP11-662M24.1; ENSG00000256343.7; AC095350.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.3609 non-coding 
CPAT coding probability 40.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RAN-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAN-4:5
4.0 lnc-RAN-4:5
4.1 lnc-RAN-4:5
5.0 lnc-RAN-4:5
5.1 lnc-RAN-4:5
5.2 lnc-RAN-4:5