Transcript: lnc-RAP1GDS1-3:5

Basic information

LNCipedia transcript ID: lnc-RAP1GDS1-3:5 
LNCipedia gene ID: lnc-RAP1GDS1-3
Location (hg38): chr4:98673290-98678326
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00008845
Alternative gene names: XLOC_003615; linc-METAP1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.8804 non-coding 
CPAT coding probability 13.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GDS1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAP1GDS1-2:4
3.1 lnc-RAP1GDS1-3:5
4.0 lnc-RAP1GDS1-3:5
4.1 lnc-RAP1GDS1-3:5
5.0 lnc-RAP1GDS1-3:5
5.1 lnc-C4orf17-17:19
5.2 lnc-RAP1GDS1-3:5