Transcript: lnc-RAP1GDS1-3:6

Basic information

LNCipedia transcript ID: lnc-RAP1GDS1-3:6 
LNCipedia gene ID: lnc-RAP1GDS1-3
Location (hg38): chr4:98658904-98664551
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5648 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT097492
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.8346 non-coding 
CPAT coding probability 7.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP1GDS1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAP1GDS1-3:6
4.0 lnc-RAP1GDS1-3:6
4.1 lnc-RAP1GDS1-3:6
5.0 lnc-RAP1GDS1-3:6
5.1 lnc-C4orf17-17:15
5.2 lnc-RAP1GDS1-3:6