Transcript: lnc-RAP2B-12:1

Basic information

LNCipedia transcript ID: lnc-RAP2B-12:1 
LNCipedia gene ID: lnc-RAP2B-12
Ensembl Gene ID: ENSG00000237787
Ensembl Transcript ID: ENST00000623038
Location (hg38): chr3:153484495-153502697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623038.1
Alternative gene names: ENSG00000237787.4; C3orf79


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -106.4224 non-coding 
CPAT coding probability 7.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP2B-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf79-12:1
4.1 lnc-C3orf79-12:1
5.0 lnc-C3orf79-12:1
5.1 lnc-SELENOT-43:1
5.2 lnc-RAP2B-12:1