Transcript: lnc-RAP2B-4:1

Basic information

LNCipedia transcript ID: lnc-RAP2B-4:1 
LNCipedia gene ID: lnc-RAP2B-4
Location (hg38): chr3:153352078-153357243
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 258 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT092777; FPKM1_group_22237_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -420.9315 non-coding 
CPAT coding probability 4.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAP2B-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf79-4:3
4.0 lnc-C3orf79-4:3
4.1 lnc-C3orf79-4:3
5.0 lnc-C3orf79-4:3
5.1 lnc-SELENOT-40:1
5.2 lnc-RAP2B-4:1