Transcript: lnc-RAPH1-2:1

Basic information

LNCipedia transcript ID: lnc-RAPH1-2:1 
LNCipedia gene ID: lnc-RAPH1-2
Ensembl Gene ID: ENSG00000237271
Ensembl Transcript ID: ENST00000419860
Location (hg38): chr2:204228137-204234985
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003485; ENST00000419860; ENST00000419860.1; AC009498.1-001; OTTHUMT00000335870.1; NONHSAT076503
Alternative gene names: XLOC_002469; linc-RAPH1-4; ENSG00000237271; AC009498.1; ENSG00000237271.1; OTTHUMG00000154544.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.4396 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAPH1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAPH1-1:1
3.1 lnc-RAPH1-2:1
4.0 lnc-RAPH1-2:1
4.1 lnc-RAPH1-2:1
5.0 lnc-RAPH1-2:1
5.1 lnc-HSPD1-93:1
5.2 lnc-RAPH1-2:1