Transcript: lnc-RASGEF1A-2:1

Basic information

LNCipedia transcript ID: lnc-RASGEF1A-2:1 
LNCipedia gene ID: lnc-RASGEF1A-2
Ensembl Gene ID: ENSG00000273008
Ensembl Transcript ID: ENST00000609407
Location (hg38): chr10:43136824-43138334
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1511 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609407.1
Alternative gene names: ENSG00000273008.1; RP11-351D16.3; AC010864.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.5847 non-coding 
CPAT coding probability 56.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RASGEF1A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGEF1A-2:1
4.0 lnc-RASGEF1A-2:1
4.1 lnc-RASGEF1A-2:1
5.0 lnc-RASGEF1A-2:1
5.1 lnc-LRRC18-98:6
5.2 lnc-RASGEF1A-2:1