Transcript: lnc-RASGRP1-3:1

Basic information

LNCipedia transcript ID: lnc-RASGRP1-3:1 
LNCipedia gene ID: lnc-RASGRP1-3
Ensembl Gene ID: ENSG00000259380
Ensembl Transcript ID: ENST00000561161
Location (hg38): chr15:38142260-38226887
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 828 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561161.1; RP11-346D14.1-002; OTTHUMT00000418241.1; NONHSAT041709
Alternative gene names: ENSG00000259380.1; RP11-346D14.1; OTTHUMG00000172384.1; ENSG00000259380.5; AC087473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.445 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASGRP1-3:1 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP1-3:1
4.0 lnc-RASGRP1-3:1
4.1 lnc-RASGRP1-3:1
5.0 lnc-RASGRP1-3:1
5.1 lnc-NANOGP8-26:5
5.2 lnc-RASGRP1-3:1