Transcript: lnc-RASGRP1-3:2

Basic information

LNCipedia transcript ID: lnc-RASGRP1-3:2 
LNCipedia gene ID: lnc-RASGRP1-3
Ensembl Gene ID: ENSG00000259380
Ensembl Transcript ID: ENST00000561320
Location (hg38): chr15:38139595-38226865
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2471 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561320.1; RP11-346D14.1-001; OTTHUMT00000418240.1; ENST00000561320.5
Alternative gene names: ENSG00000259380.1; RP11-346D14.1; OTTHUMG00000172384.1; ENSG00000259380.5; AC087473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.4122 non-coding 
CPAT coding probability 97.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RASGRP1-3:2 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP1-3:2
4.0 lnc-RASGRP1-3:2
4.1 lnc-RASGRP1-3:2
5.0 lnc-RASGRP1-3:2
5.1 lnc-NANOGP8-26:6
5.2 lnc-RASGRP1-3:2