Transcript: lnc-RASGRP1-3:3

Basic information

LNCipedia transcript ID: lnc-RASGRP1-3:3 
LNCipedia gene ID: lnc-RASGRP1-3
Location (hg38): chr15:38223066-38226935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1477 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT041710; FPKM1_group_10003_transcript_3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.4716 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASGRP1-3:3 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP1-3:3
4.0 lnc-RASGRP1-3:3
4.1 lnc-RASGRP1-3:3
5.0 lnc-RASGRP1-3:3
5.1 lnc-NANOGP8-26:2
5.2 lnc-RASGRP1-3:3