Transcript: lnc-RASGRP1-3:7

Basic information

LNCipedia transcript ID: lnc-RASGRP1-3:7 
LNCipedia gene ID: lnc-RASGRP1-3
Location (hg38): chr15:38142260-38226891
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259380.1|ENST00000561161.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.445 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RASGRP1-3:7 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RASGRP1-3:7
5.0 lnc-RASGRP1-3:7
5.1 lnc-NANOGP8-26:4
5.2 lnc-RASGRP1-3:7