Transcript: lnc-RBFOX3-22:2

Basic information

LNCipedia transcript ID: lnc-RBFOX3-22:2 
LNCipedia gene ID: lnc-RBFOX3-22
Ensembl Gene ID: ENSG00000263278
Ensembl Transcript ID: ENST00000611949
Location (hg38): chr17:79598618-79601292
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2675 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611949.1
Alternative gene names: ENSG00000263278.2; CH17-351M24.1; AC233701.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.2259 non-coding 
CPAT coding probability 59.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RBFOX3-22:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SGSH-22:2
5.1 lnc-SGSH-22:2
5.2 lnc-RBFOX3-22:2