Transcript: lnc-RBKS-87:1

Basic information

LNCipedia transcript ID: lnc-RBKS-87:1 
LNCipedia gene ID: lnc-RBKS-87
Ensembl Gene ID: ENSG00000223522
Ensembl Transcript ID: ENST00000418963
RefSeq ID: NR_038319
Location (hg38): chr2:28307691-28310459
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2110 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000418963.1; AC093690.1-001; OTTHUMT00000324543.2; NONHSAT069816; NR_038319; NR_038319.1
Alternative gene names: ENSG00000223522.1; AC093690.1; OTTHUMG00000151943.2; LOC100505716


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5559 non-coding 
CPAT coding probability 8.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBKS-87:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBKS-2:1
4.0 lnc-RBKS-2:1
4.1 lnc-RBKS-2:1
5.0 lnc-RBKS-2:1
5.1 lnc-RBKS-15:1
5.2 lnc-RBKS-87:1