Transcript: lnc-RBL2-1:1

Basic information

LNCipedia transcript ID: lnc-RBL2-1:1 
LNCipedia gene ID: lnc-RBL2-1
Ensembl Gene ID: ENSG00000261804
Ensembl Transcript ID: ENST00000566383
RefSeq ID: NR_119378
Location (hg38): chr16:53373493-53384259
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566383.1; RP11-44F14.2-001; OTTHUMT00000422365.1; NONHSAT142571; NR_119378; NR_119378.1
Alternative gene names: ENSG00000261804.1; RP11-44F14.2; OTTHUMG00000173195.1; AC007342.4; LOC102723373


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.9067 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBL2-1:1
4.0 lnc-RBL2-1:1
4.1 lnc-RBL2-1:1
5.0 lnc-RBL2-1:1
5.1 lnc-ADGRG1-99:6
5.2 lnc-RBL2-1:1