Transcript: lnc-RBM22-2:1

Basic information

LNCipedia transcript ID: lnc-RBM22-2:1 
LNCipedia gene ID: lnc-RBM22-2
Ensembl Gene ID: ENSG00000253852
Ensembl Transcript ID: ENST00000517474
Location (hg38): chr5:150608428-150615354
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 617 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517474.1; CTB-140J7.2-001; OTTHUMT00000381793.1; NONHSAT104571
Alternative gene names: ENSG00000253852.1; CTB-140J7.2; OTTHUMG00000165096.1; AC011383.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -289.3174 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM22-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBM22-2:1
4.0 lnc-RBM22-2:1
4.1 lnc-RBM22-2:1
5.0 lnc-RBM22-2:1
5.1 lnc-FAXDC2-45:5
5.2 lnc-RBM22-2:1