Transcript: lnc-RBM6-4:1

Basic information

LNCipedia transcript ID: lnc-RBM6-4:1 
LNCipedia gene ID: lnc-RBM6-4
Ensembl Gene ID: ENSG00000228008
Ensembl Transcript ID: ENST00000424174
Location (hg38): chr3:49903845-49906237
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 422 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT089772; ENST00000424174.1
Alternative gene names: ENSG00000228008.1; CTD-2330K9.3; AC105935.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.691 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RBM6-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBM6-4:1
4.0 lnc-RBM6-4:1
4.1 lnc-RBM6-4:1
5.0 lnc-RBM6-4:1
5.1 lnc-GNAT1-10:1
5.2 lnc-RBM6-4:1