Transcript: lnc-RC3H1-1:4

Basic information

LNCipedia transcript ID: lnc-RC3H1-1:4 
LNCipedia gene ID: lnc-RC3H1-1
Ensembl Gene ID: ENSG00000227373
Ensembl Transcript ID: ENST00000454467
Location (hg38): chr1:174115601-174159133
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 361 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454467; ENST00000454467.1; RP11-160H22.5-003; OTTHUMT00000084252.1; NONHSAT007725; ENST00000454467.5
Alternative gene names: ENSG00000227373; RP11-160H22.5; ENSG00000227373.1; OTTHUMG00000034822.1; ENSG00000227373.5; AL121983.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.0002 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RC3H1-1:4 no no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RC3H1-1:4
3.1 lnc-RC3H1-1:4
4.0 lnc-RC3H1-1:4
4.1 lnc-RC3H1-1:4
5.0 lnc-RC3H1-1:4
5.1 lnc-SH2D1B-128:15
5.2 lnc-RC3H1-1:4