Transcript: lnc-RC3H1-1:6

Basic information

LNCipedia transcript ID: lnc-RC3H1-1:6 
LNCipedia gene ID: lnc-RC3H1-1
Location (hg38): chr1:174113867-174115446
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1580 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT007721
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.4546 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RC3H1-1:6 no no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RC3H1-1:6
4.0 lnc-RC3H1-1:6
4.1 lnc-RC3H1-1:6
5.0 lnc-RC3H1-1:6
5.1 lnc-SH2D1B-128:16
5.2 lnc-RC3H1-1:6