Transcript: lnc-RCC1L-2:1

Basic information

LNCipedia transcript ID: lnc-RCC1L-2:1 
LNCipedia gene ID: lnc-RCC1L-2
Location (hg38): chr7:74968456-74969451
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 280 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000448088.1; AC004878.8-001; OTTHUMT00000342384.2; NONHSAT121515
Alternative gene names: ENSG00000254977.1; AC004878.8; OTTHUMG00000162597.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2734 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RCC1L-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2IRD2B-1:1
4.0 lnc-GTF2IRD2B-1:1
4.1 lnc-GTF2IRD2B-1:1
5.0 lnc-GTF2IRD2B-1:1
5.1 lnc-TRIM74-32:1
5.2 lnc-RCC1L-2:1