Transcript: lnc-RDH13-12:1

Basic information

LNCipedia transcript ID: lnc-RDH13-12:1 
LNCipedia gene ID: lnc-RDH13-12
Ensembl Gene ID: ENSG00000267149
Ensembl Transcript ID: ENST00000585492
Location (hg38): chr19:55027593-55053928
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1271 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000585492.1
Alternative gene names: ENSG00000267149.2; CTC-550B14.6; AC011476.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2947.5188 coding 
CPAT coding probability 99.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RDH13-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GP6-2:13
4.0 lnc-GP6-2:13
4.1 lnc-GP6-2:13
5.0 lnc-GP6-2:13
5.1 lnc-RDH13-5:1
5.2 lnc-RDH13-12:1