Transcript: lnc-RDX-1:10

Basic information

LNCipedia transcript ID: lnc-RDX-1:10 
LNCipedia gene ID: lnc-RDX-1
Ensembl Gene ID: ENSG00000255028
Ensembl Transcript ID: ENST00000532929
Location (hg38): chr11:109413254-109583643
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 803 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532929.1; RP11-708B6.2-002; OTTHUMT00000390402.1; NONHSAT024051
Alternative gene names: ENSG00000255028.1; RP11-708B6.2; OTTHUMG00000166558.1; ENSG00000255028.5; AP003049.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -449.3643 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RDX-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RDX-2:2
4.0 lnc-RDX-2:2
4.1 lnc-RDX-1:10
5.0 lnc-RDX-1:10
5.1 lnc-ARHGAP20-30:10
5.2 lnc-RDX-1:10