Transcript: lnc-RECQL5-1:1

Basic information

LNCipedia transcript ID: lnc-RECQL5-1:1 
LNCipedia gene ID: lnc-RECQL5-1
Ensembl Gene ID: ENSG00000264829
Ensembl Transcript ID: ENST00000583910
Location (hg38): chr17:75679474-75679967
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 352 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583910.1; RP11-474I11.8-001; OTTHUMT00000448254.1; NONHSAT055930
Alternative gene names: ENSG00000264829.1; RP11-474I11.8; OTTHUMG00000179799.1; AC087749.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -383.5999 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RECQL5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RECQL5-1:1
4.0 lnc-RECQL5-1:1
4.1 lnc-RECQL5-1:1
5.0 lnc-RECQL5-1:1
5.1 lnc-CASKIN2-7:1
5.2 lnc-RECQL5-1:1