Transcript: lnc-RECQL5-2:2

Basic information

LNCipedia transcript ID: lnc-RECQL5-2:2 
LNCipedia gene ID: lnc-RECQL5-2
Ensembl Gene ID: ENSG00000264270
Ensembl Transcript ID: ENST00000582093
Location (hg38): chr17:75683543-75684042
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 302 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582093.1; RP11-474I11.7-002; OTTHUMT00000448255.1; NONHSAT055931
Alternative gene names: ENSG00000264270.1; RP11-474I11.7; OTTHUMG00000179800.1; AC087749.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.7041 non-coding 
CPAT coding probability 7.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RECQL5-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RECQL5-2:2
4.0 lnc-RECQL5-2:2
4.1 lnc-RECQL5-2:2
5.0 lnc-RECQL5-2:2
5.1 lnc-CASKIN2-8:2
5.2 lnc-RECQL5-2:2