Transcript: lnc-REELD1-1:1

Basic information

LNCipedia transcript ID: lnc-REELD1-1:1 
LNCipedia gene ID: lnc-REELD1-1
Ensembl Gene ID: ENSG00000251010
Ensembl Transcript ID: ENST00000510996
Location (hg38): chr4:146241806-146243669
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 732 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007649; ENST00000510996.1; RP11-6L6.7-001; OTTHUMT00000366941.1; NONHSAT098667
Alternative gene names: XLOC_003723; linc-POU4F2-2; ENSG00000251010.1; RP11-6L6.7; OTTHUMG00000162030.1; AC097372.2; AC097372.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.0855 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-REELD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-6L6.2.1-1:1
3.1 lnc-RP11-6L6.2.1-1:1
4.0 lnc-RP11-6L6.2.1-1:1
4.1 lnc-RP11-6L6.2.1-1:1
5.0 lnc-RP11-6L6.2.1-1:1
5.1 lnc-C4orf51-12:1
5.2 lnc-REELD1-1:1