Transcript: lnc-REEP3-2:4

Basic information

LNCipedia transcript ID: lnc-REEP3-2:4 
LNCipedia gene ID: lnc-REEP3-2
Ensembl Gene ID: ENSG00000228566
Ensembl Transcript ID: ENST00000444770
Location (hg38): chr10:63664664-63990568
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 794 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444770; ENST00000444770.1; RP11-170M17.1-001; OTTHUMT00000048265.1; NONHSAT013610
Alternative gene names: ENSG00000228566; RP11-170M17.1; ENSG00000228566.1; OTTHUMG00000018320.1; AC022387.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1823 non-coding 
CPAT coding probability 30.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-REEP3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-REEP3-1:1
3.1 lnc-REEP3-1:1
4.0 lnc-REEP3-1:1
4.1 lnc-REEP3-2:4
5.0 lnc-REEP3-2:4
5.1 lnc-MTRNR2L5-54:1
5.2 lnc-REEP3-2:4