Transcript: lnc-REL-1:3

Basic information

LNCipedia transcript ID: lnc-REL-1:3 
LNCipedia gene ID: lnc-REL-1
Ensembl Gene ID: ENSG00000267520
Ensembl Transcript ID: ENST00000589496
Location (hg38): chr2:60925909-60931610
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5702 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000589496.2
Alternative gene names: ENSG00000267520.2; RP11-373L24.1; AC010733.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.378 non-coding 
CPAT coding probability 96.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-REL-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-REL-1:3
4.0 lnc-REL-1:3
4.1 lnc-REL-1:3
5.0 lnc-REL-1:3
5.1 lnc-PAPOLG-1:3
5.2 lnc-REL-1:3