Transcript: lnc-REL-6:3

Basic information

LNCipedia transcript ID: lnc-REL-6:3 
LNCipedia gene ID: lnc-REL-6
Location (hg38): chr2:60932828-60936332
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2828 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000501118; TCONS_00002901; NONHSAT070917
Alternative gene names: ENSG00000245247; XLOC_001489; linc-PEX13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2951 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-REL-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-REL-1:1
3.1 lnc-REL-1:1
4.0 lnc-REL-1:1
4.1 lnc-REL-1:1
5.0 lnc-REL-1:1
5.1 lnc-PAPOLG-15:4
5.2 lnc-REL-6:3