Transcript: lnc-RERE-2:1

Basic information

LNCipedia transcript ID: lnc-RERE-2:1 
LNCipedia gene ID: lnc-RERE-2
Ensembl Gene ID: ENSG00000233645
Ensembl Transcript ID: ENST00000424689
Location (hg38): chr1:8218190-8220529
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000468; ENST00000424689; ENST00000424689.1; RP11-431K24.4-001; OTTHUMT00000004931.1; NONHSAT000741
Alternative gene names: XLOC_000696; linc-ERRFI1; ENSG00000233645; RP11-431K24.4; ENSG00000233645.1; OTTHUMG00000001770.1; AL358876.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.7568 non-coding 
CPAT coding probability 7.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RERE-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RERE-1:1
3.1 lnc-RERE-2:1
4.0 lnc-RERE-2:1
4.1 lnc-RERE-2:1
5.0 lnc-RERE-2:1
5.1 lnc-CLSTN1-25:1
5.2 lnc-RERE-2:1