Transcript: lnc-RFC4-1:1

Basic information

LNCipedia transcript ID: lnc-RFC4-1:1 
LNCipedia gene ID: lnc-RFC4-1
Ensembl Gene ID: ENSG00000263826
Ensembl Transcript ID: ENST00000577781
Location (hg38): chr3:186781780-186784179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2400 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577781.1; RP11-573D15.9-001; OTTHUMT00000441755.1; NONHSAT093848
Alternative gene names: ENSG00000263826.1; RP11-573D15.9; OTTHUMG00000178374.1; AC112907.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.3007 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFC4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFC4-1:1
4.0 lnc-RFC4-1:1
4.1 lnc-RFC4-1:1
5.0 lnc-RFC4-1:1
5.1 lnc-TBCCD1-1:5
5.2 lnc-RFC4-1:1