Transcript: lnc-RFPL4B-1:16

Basic information

LNCipedia transcript ID: lnc-RFPL4B-1:16 
LNCipedia gene ID: lnc-RFPL4B-1
Ensembl Gene ID: ENSG00000226440
Ensembl Transcript ID: ENST00000628122
Location (hg38): chr6:112236830-112251613
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 413 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628122.2
Alternative gene names: ENSG00000226440.7; RP11-506B6.6; AL365214.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -281.6919 non-coding 
CPAT coding probability 7.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFPL4B-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RFPL4B-1:16
4.1 lnc-RFPL4B-1:16
5.0 lnc-RFPL4B-1:16
5.1 lnc-RFPL4B-1:16
5.2 lnc-RFPL4B-1:16