Transcript: lnc-RFPL4B-1:5

Basic information

LNCipedia transcript ID: lnc-RFPL4B-1:5 
LNCipedia gene ID: lnc-RFPL4B-1
Location (hg38): chr6:112236806-112345321
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 775 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT114511; ENST00000585504.1
Alternative gene names: ENSG00000226440.3; RP11-506B6.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.6332 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RFPL4B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFPL4B-1:5
4.0 lnc-RFPL4B-1:5
4.1 lnc-RFPL4B-1:5
5.0 lnc-RFPL4B-1:5
5.1 lnc-RFPL4B-1:5
5.2 lnc-RFPL4B-1:5