Transcript: lnc-RGL4-4:3

Basic information

LNCipedia transcript ID: lnc-RGL4-4:3 
LNCipedia gene ID: lnc-RGL4-4
Location (hg38): chr22:23496337-23510507
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 742 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029776; NONHSAT083895
Alternative gene names: XLOC_014172; linc-RGL4-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0773 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGL4-4:3 no no no no

Available literature

  1. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)
  2. Tang (2015), Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGL4-4:3
3.1 lnc-RGL4-4:3
4.0 lnc-RGL4-4:3
4.1 lnc-RGL4-4:3
5.0 lnc-RGL4-4:3
5.1 lnc-SLC2A11-15:3
5.2 lnc-RGL4-4:3