Transcript: lnc-RGMA-13:2

Basic information

LNCipedia transcript ID: lnc-RGMA-13:2 
LNCipedia gene ID: lnc-RGMA-13
Ensembl Gene ID: ENSG00000272298
Ensembl Transcript ID: ENST00000554000
Location (hg38): chr15:92699040-92724277
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 240 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT049652; ENST00000554000.2
Alternative gene names: ENSG00000272298.1; RP11-386M24.8; AC091544.7; AC091544.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.6698 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGMA-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGMA-13:2
4.0 lnc-RGMA-13:2
4.1 lnc-RGMA-13:2
5.0 lnc-RGMA-13:2
5.1 lnc-CIB1-32:2
5.2 lnc-RGMA-13:2