Transcript: lnc-RGMA-18:1

Basic information

LNCipedia transcript ID: lnc-RGMA-18:1 
LNCipedia gene ID: lnc-RGMA-18
Ensembl Gene ID: ENSG00000258773
Ensembl Transcript ID: ENST00000554787
Location (hg38): chr15:95080095-95132859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554787; ENST00000554787.1; RP11-255M2.2-001; OTTHUMT00000415212.1; NONHSAT050178
Alternative gene names: ENSG00000258773; RP11-255M2.2; ENSG00000258773.1; OTTHUMG00000171817.1; AC087636.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.3093 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGMA-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016251.1-5:1
3.1 lnc-AC016251.1-9:1
4.0 lnc-AC016251.1-9:1
4.1 lnc-AC016251.1-9:1
5.0 lnc-AC016251.1-9:1
5.1 lnc-CIB1-53:1
5.2 lnc-RGMA-18:1