Transcript: lnc-RGMA-3:1

Basic information

LNCipedia transcript ID: lnc-RGMA-3:1 
LNCipedia gene ID: lnc-RGMA-3
Ensembl Gene ID: ENSG00000260361
Ensembl Transcript ID: ENST00000562894
Location (hg38): chr15:92779757-92781492
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1736 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562894.1; CTD-2313J17.5-001; OTTHUMT00000421973.1; NONHSAT049660
Alternative gene names: ENSG00000260361.1; CTD-2313J17.5; OTTHUMG00000173063.1; AC106028.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.0212 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGMA-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGMA-3:1
4.0 lnc-RGMA-3:1
4.1 lnc-RGMA-3:1
5.0 lnc-RGMA-3:1
5.1 lnc-CIB1-33:1
5.2 lnc-RGMA-3:1