Transcript: lnc-RGMA-4:1

Basic information

LNCipedia transcript ID: lnc-RGMA-4:1 
LNCipedia gene ID: lnc-RGMA-4
Ensembl Gene ID: ENSG00000258909
Ensembl Transcript ID: ENST00000556708
Location (hg38): chr15:93416850-93422576
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2284 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556708; ENST00000556708.1; RP11-164C12.2-001; OTTHUMT00000415160.1; NONHSAT049874
Alternative gene names: ENSG00000258909; RP11-164C12.2; ENSG00000258909.1; OTTHUMG00000171793.1; AC091078.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.246 non-coding 
CPAT coding probability 21.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGMA-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGMA-2:1
3.1 lnc-RGMA-4:1
4.0 lnc-RGMA-4:1
4.1 lnc-RGMA-4:1
5.0 lnc-RGMA-4:1
5.1 lnc-CIB1-41:1
5.2 lnc-RGMA-4:1