Transcript: lnc-RGS1-1:1

Basic information

LNCipedia transcript ID: lnc-RGS1-1:1 
LNCipedia gene ID: lnc-RGS1-1
Ensembl Gene ID: ENSG00000236069
Ensembl Transcript ID: ENST00000457321
Location (hg38): chr1:192529579-192538102
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 684 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457321; ENST00000457321.1; RP5-1011O1.3-001; OTTHUMT00000098613.1; NONHSAT008533
Alternative gene names: ENSG00000236069; RP5-1011O1.3; ENSG00000236069.1; OTTHUMG00000041136.1; AL136987.2; ENSG00000236069.2; AL136987.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.7859 non-coding 
CPAT coding probability 9.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGS1-1:1
3.1 lnc-RGS1-1:1
4.0 lnc-RGS1-1:1
4.1 lnc-RGS1-1:1
5.0 lnc-RGS1-1:1
5.1 lnc-CFHR3-61:6
5.2 lnc-RGS1-1:1