Transcript: lnc-RGS5-1:11

Basic information

LNCipedia transcript ID: lnc-RGS5-1:11 
LNCipedia gene ID: lnc-RGS5-1
Location (hg38): chr1:163147474-163321735
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000531954.1; RP11-267N12.3-012; OTTHUMT00000388570.1
Alternative gene names: ENSG00000232995.2; RP11-267N12.3; OTTHUMG00000033150.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.7265 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS5-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS5-1:11
4.0 lnc-RGS5-1:11
4.1 lnc-RGS5-1:11
5.0 lnc-RGS5-1:11
5.1 lnc-SH2D1B-22:13
5.2 lnc-RGS5-1:11