Transcript: lnc-RGS7-1:1

Basic information

LNCipedia transcript ID: lnc-RGS7-1:1 
LNCipedia gene ID: lnc-RGS7-1
Location (hg38): chr1:240739429-240743611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00000771; ENST00000431139; ENST00000431139.1; RP11-80B9.4-001; OTTHUMT00000097470.1
Alternative gene names: XLOC_001278; linc-GREM2-2; ENSG00000230015; RP11-80B9.4; ENSG00000230015.1; OTTHUMG00000040503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.7427 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGS7-1:1
3.1 lnc-RGS7-1:1
4.0 lnc-RGS7-1:1
4.1 lnc-RGS7-1:1
5.0 lnc-RGS7-1:1
5.1 lnc-GREM2-14:2
5.2 lnc-RGS7-1:1