Transcript: lnc-RGS7-2:1

Basic information

LNCipedia transcript ID: lnc-RGS7-2:1 
LNCipedia gene ID: lnc-RGS7-2
Ensembl Gene ID: ENSG00000231440
Ensembl Transcript ID: ENST00000428891
Location (hg38): chr1:240588522-240590748
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 675 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428891.1; RP11-467I20.6-001; OTTHUMT00000097889.1; NONHSAT010500
Alternative gene names: ENSG00000231440.1; RP11-467I20.6; OTTHUMG00000040729.1; AL358176.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8983 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS7-2:1
4.0 lnc-RGS7-2:1
4.1 lnc-RGS7-2:1
5.0 lnc-RGS7-2:1
5.1 lnc-FH-9:1
5.2 lnc-RGS7-2:1