Transcript: lnc-RGS9-2:1

Basic information

LNCipedia transcript ID: lnc-RGS9-2:1 
LNCipedia gene ID: lnc-RGS9-2
Ensembl Gene ID: ENSG00000266598
Ensembl Transcript ID: ENST00000581796
Location (hg38): chr17:65051909-65053308
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 537 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581796.1; RP11-583F2.5-001; OTTHUMT00000445722.1; NONHSAT055354
Alternative gene names: ENSG00000266598.1; RP11-583F2.5; OTTHUMG00000179317.1; AC037487.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.2547 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS9-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS9-2:1
4.0 lnc-RGS9-2:1
4.1 lnc-RGS9-2:1
5.0 lnc-RGS9-2:1
5.1 lnc-TANC2-66:1
5.2 lnc-RGS9-2:1