Transcript: lnc-RGS9-3:4

Basic information

LNCipedia transcript ID: lnc-RGS9-3:4 
LNCipedia gene ID: lnc-RGS9-3
Ensembl Gene ID: ENSG00000265218
Ensembl Transcript ID: ENST00000584959
Location (hg38): chr17:64892824-64910180
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 631 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584959.1; RP11-927P21.1-003; OTTHUMT00000445609.1; NONHSAT055325
Alternative gene names: ENSG00000265218.1; RP11-927P21.1; OTTHUMG00000179297.1; AC103810.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9971 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS9-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC037487.1-3:3
4.0 lnc-AC037487.1-3:3
4.1 lnc-AC037487.1-3:3
5.0 lnc-AC037487.1-3:3
5.1 lnc-TANC2-60:4
5.2 lnc-RGS9-3:4