Transcript: lnc-RHBDD1-6:4

Basic information

LNCipedia transcript ID: lnc-RHBDD1-6:4 
LNCipedia gene ID: lnc-RHBDD1-6
Ensembl Gene ID: ENSG00000272622
Ensembl Transcript ID: ENST00000607970
Location (hg38): chr2:226800146-226811029
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607970.1
Alternative gene names: ENSG00000272622.1; RP11-395N3.2; AC010735.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.3393 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHBDD1-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHBDD1-3:1
4.0 lnc-RHBDD1-3:1
4.1 lnc-RHBDD1-3:1
5.0 lnc-RHBDD1-3:1
5.1 lnc-SP140-36:8
5.2 lnc-RHBDD1-6:4